Index _ | A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | R | S | T | U | V | W _ __init__() (tike.operators.Alignment method) (tike.operators.Bucket method) (tike.operators.CachedFFT method) (tike.operators.Convolution method) (tike.operators.Flow method) (tike.operators.Lamino method) (tike.operators.Operator method) (tike.operators.Pad method) (tike.operators.Patch method) (tike.operators.Propagation method) (tike.operators.Ptycho method) (tike.operators.Rotate method) (tike.operators.Shift method) (tike.ptycho.exitwave.ExitWaveOptions method) (tike.ptycho.object.ObjectOptions method) (tike.ptycho.position.AffineTransform method) (tike.ptycho.position.PositionOptions method) (tike.ptycho.probe.ProbeOptions method) (tike.ptycho.ptycho.Reconstruction method) (tike.ptycho.solvers.DmOptions method) (tike.ptycho.solvers.LstsqOptions method) (tike.ptycho.solvers.PtychoParameters method) (tike.ptycho.solvers.RpieOptions method) __new__() (tike.operators.Alignment method) (tike.operators.Bucket method) (tike.operators.CachedFFT method) (tike.operators.Convolution method) (tike.operators.Flow method) (tike.operators.Lamino method) (tike.operators.Operator method) (tike.operators.Pad method) (tike.operators.Patch method) (tike.operators.Propagation method) (tike.operators.Ptycho method) (tike.operators.Rotate method) (tike.operators.Shift method) A adadelta() (in module tike.opt) adagrad() (in module tike.opt) adam() (in module tike.opt) add_modes_cartesian_hermite() (in module tike.ptycho.probe) add_modes_random_phase() (in module tike.ptycho.probe) additional_probe_penalty (tike.ptycho.probe.ProbeOptions attribute) adjust_probe_power() (in module tike.ptycho.probe) affine_position_regularization() (in module tike.ptycho.position) AffineTransform (class in tike.ptycho.position) algorithm_options (tike.ptycho.solvers.PtychoParameters attribute) Alignment (class in tike.operators) alpha (tike.ptycho.solvers.RpieOptions attribute) angle (tike.ptycho.position.AffineTransform attribute) append() (tike.ptycho.position.PositionOptions method) append_new_data() (tike.ptycho.ptycho.Reconstruction method) apply_median_filter_abs_probe() (in module tike.ptycho.probe) asarray() (tike.ptycho.position.AffineTransform method) asarray3() (tike.ptycho.position.AffineTransform method) astuple() (tike.ptycho.position.AffineTransform method) avgspeed() (in module tike.scan) B batch_indicies() (in module tike.opt) batch_method (tike.ptycho.solvers.DmOptions attribute) (tike.ptycho.solvers.LstsqOptions attribute) (tike.ptycho.solvers.RpieOptions attribute) billiard() (in module tike.scan) Bucket (class in tike.operators) bucket() (in module tike.lamino.solvers) by_scan_grid() (in module tike.cluster) by_scan_stripes() (in module tike.cluster) by_scan_stripes_contiguous() (in module tike.cluster) C CachedFFT (class in tike.operators) cfloating (in module tike.precision) cgrad() (in module tike.lamino.solvers) check_allowed_positions() (in module tike.ptycho.position) clip_magnitude (tike.ptycho.object.ObjectOptions attribute) cluster_compact() (in module tike.cluster) (in module tike.random) cluster_wobbly_center() (in module tike.cluster) (in module tike.random) coded_exposure() (in module tike.trajectory) combined_update (tike.ptycho.object.ObjectOptions attribute) compact() (in module tike.cluster) complex_amplitude() (in module tike.constants) complex_intensity() (in module tike.constants) complex_phase() (in module tike.constants) complexHSV_to_RGB() (in module tike.view) confidence (tike.ptycho.position.PositionOptions attribute) conjugate_gradient() (in module tike.opt) constrain_center_peak() (in module tike.ptycho.probe) constrain_probe_sparsity() (in module tike.ptycho.probe) constrain_variable_probe() (in module tike.ptycho.probe) convergence_tolerance (tike.ptycho.object.ObjectOptions attribute) convergence_window (tike.ptycho.solvers.DmOptions attribute) (tike.ptycho.solvers.LstsqOptions attribute) (tike.ptycho.solvers.RpieOptions attribute) Convolution (class in tike.operators) copy_to_device() (tike.ptycho.exitwave.ExitWaveOptions method) (tike.ptycho.object.ObjectOptions method) (tike.ptycho.position.PositionOptions method) (tike.ptycho.probe.ProbeOptions method) copy_to_host() (tike.ptycho.exitwave.ExitWaveOptions method) (tike.ptycho.object.ObjectOptions method) (tike.ptycho.position.PositionOptions method) (tike.ptycho.probe.ProbeOptions method) cost (tike.operators.Propagation attribute) costs (tike.ptycho.solvers.DmOptions attribute) (tike.ptycho.solvers.LstsqOptions attribute) (tike.ptycho.solvers.RpieOptions attribute) cov() (in module tike.linalg) crop_fourier_space() (in module tike.ptycho.exitwave) (in module tike.ptycho.solvers) cross_correlation() (in module tike.align.solvers) cupy_complex() (in module tike.random) D detector_shape (tike.operators.Propagation attribute) diagonal() (in module tike.scan) dir_single() (in module tike.opt) direction_dy() (in module tike.opt) discrete_trajectory() (in module tike.trajectory) distance() (in module tike.scan) dm() (in module tike.ptycho.solvers) DmOptions (class in tike.ptycho.solvers) E eigen_probe (tike.ptycho.solvers.PtychoParameters attribute) eigen_weights (tike.ptycho.solvers.PtychoParameters attribute) empty() (tike.ptycho.position.PositionOptions method) estimate_global_transformation() (in module tike.ptycho.position) estimate_global_transformation_ransac() (in module tike.ptycho.position) exitwave_options (tike.ptycho.solvers.PtychoParameters attribute) ExitWaveOptions (class in tike.ptycho.exitwave) extract_patches() (in module tike.ptycho.learn) F farneback() (in module tike.align.solvers) finite_probe_support() (in module tike.ptycho.probe) fit_line_least_squares() (in module tike.opt) floating (in module tike.precision) Flow (class in tike.operators) force_centered_intensity (tike.ptycho.probe.ProbeOptions attribute) force_orthogonality (tike.ptycho.probe.ProbeOptions attribute) force_sparsity (tike.ptycho.probe.ProbeOptions attribute) fromarray() (tike.ptycho.position.AffineTransform class method) G gaussian() (in module tike.operators) (in module tike.ptycho.probe) gaussian_each_pattern() (in module tike.operators) gaussian_grad() (in module tike.operators) gaussian_gradient() (in module tike.ptycho.position) get_absorbtion_image() (in module tike.ptycho.object) get_batch() (in module tike.opt) get_convergence() (tike.ptycho.ptycho.Reconstruction method) get_padded_object() (in module tike.ptycho.object) get_probe() (tike.ptycho.ptycho.Reconstruction method) get_psi() (tike.ptycho.ptycho.Reconstruction method) get_result() (tike.ptycho.ptycho.Reconstruction method) get_scan() (tike.ptycho.ptycho.Reconstruction method) get_varying_probe() (in module tike.ptycho.probe) grad (tike.operators.Propagation attribute) H hermitian() (in module tike.linalg) hexagonal() (in module tike.scan) I init_rescale_from_measurements (tike.ptycho.probe.ProbeOptions attribute) init_varying_probe() (in module tike.ptycho.probe) initial_scan (tike.ptycho.position.PositionOptions attribute) inner() (in module tike.linalg) insert() (tike.ptycho.position.PositionOptions method) integer (in module tike.precision) invert() (in module tike.align.align) is_converged() (in module tike.opt) iterate() (tike.ptycho.ptycho.Reconstruction method) J join() (tike.ptycho.position.PositionOptions method) L Lamino (class in tike.operators) lengths() (in module tike.scan) line_search() (in module tike.opt) lissajous() (in module tike.scan) lstsq() (in module tike.linalg) lstsq_grad() (in module tike.ptycho.solvers) LstsqOptions (class in tike.ptycho.solvers) M m (tike.ptycho.object.ObjectOptions attribute) (tike.ptycho.position.PositionOptions property) (tike.ptycho.probe.ProbeOptions attribute) mdecay (tike.ptycho.object.ObjectOptions attribute) (tike.ptycho.position.PositionOptions attribute) (tike.ptycho.probe.ProbeOptions attribute) measured_pixels (tike.ptycho.exitwave.ExitWaveOptions attribute) median_filter_abs_probe (tike.ptycho.probe.ProbeOptions attribute) median_filter_abs_probe_px (tike.ptycho.probe.ProbeOptions attribute) mnorm() (in module tike.linalg) module tike.align tike.align.align tike.align.solvers tike.cluster tike.communicators tike.constants tike.lamino tike.lamino.lamino tike.lamino.solvers tike.linalg tike.operators tike.opt tike.precision tike.ptycho tike.ptycho.exitwave tike.ptycho.fresnel tike.ptycho.io tike.ptycho.learn tike.ptycho.object tike.ptycho.position tike.ptycho.probe tike.ptycho.ptycho tike.ptycho.solvers tike.random tike.scan tike.trajectory tike.view momentum() (in module tike.opt) MW_probe() (in module tike.ptycho.fresnel) mx (tike.ptycho.position.PositionOptions property) my (tike.ptycho.position.PositionOptions property) N n (tike.operators.Bucket attribute) (tike.operators.Lamino attribute) name (tike.ptycho.solvers.DmOptions attribute) (tike.ptycho.solvers.LstsqOptions attribute) (tike.ptycho.solvers.RpieOptions attribute) noise_model (tike.ptycho.exitwave.ExitWaveOptions attribute) norm() (in module tike.linalg) nscan (tike.operators.Convolution attribute) ntheta (tike.operators.Convolution attribute) num_batch (tike.ptycho.solvers.DmOptions attribute) (tike.ptycho.solvers.LstsqOptions attribute) (tike.ptycho.solvers.RpieOptions attribute) num_iter (tike.ptycho.solvers.DmOptions attribute) (tike.ptycho.solvers.LstsqOptions attribute) (tike.ptycho.solvers.RpieOptions attribute) numpy_complex() (in module tike.random) O object_options (tike.ptycho.solvers.PtychoParameters attribute) ObjectOptions (class in tike.ptycho.object) Operator (class in tike.operators) origin (tike.ptycho.position.PositionOptions attribute) orthogonalize_eig() (in module tike.ptycho.probe) orthogonalize_gs() (in module tike.linalg) P Pad (class in tike.operators) Patch (class in tike.operators) pca_eig() (in module tike.linalg) peek() (tike.ptycho.ptycho.Reconstruction method) plot_affine_transform() (in module tike.view) plot_complex() (in module tike.view) plot_cost_convergence() (in module tike.view) plot_eigen_weights() (in module tike.view) plot_footprint() (in module tike.view) plot_phase() (in module tike.view) plot_position_error() (in module tike.view) plot_positions() (in module tike.view) plot_positions_convergence() (in module tike.view) plot_probe_power() (in module tike.view) plot_probe_power_series() (in module tike.view) plot_sino_coverage() (in module tike.view) plot_trajectories() (in module tike.view) poisson() (in module tike.operators) poisson_each_pattern() (in module tike.operators) poisson_grad() (in module tike.operators) poisson_steplength_all_modes() (in module tike.ptycho.exitwave) poisson_steplength_dominant_mode() (in module tike.ptycho.exitwave) position_options (tike.ptycho.solvers.PtychoParameters attribute) position_units_to_pixels() (in module tike.ptycho.io) PositionOptions (class in tike.ptycho.position) positivity_constraint (tike.ptycho.object.ObjectOptions attribute) positivity_constraint() (in module tike.ptycho.object) power (tike.ptycho.probe.ProbeOptions attribute) power() (in module tike.ptycho.probe) preconditioner (tike.ptycho.object.ObjectOptions attribute) (tike.ptycho.probe.ProbeOptions attribute) probe (tike.ptycho.solvers.PtychoParameters attribute) probe_options (tike.ptycho.solvers.PtychoParameters attribute) probe_photons (tike.ptycho.probe.ProbeOptions attribute) probe_shape (tike.operators.Convolution attribute) probe_support (tike.ptycho.probe.ProbeOptions attribute) probe_support_degree (tike.ptycho.probe.ProbeOptions attribute) probe_support_radius (tike.ptycho.probe.ProbeOptions attribute) probe_update_sum (tike.ptycho.probe.ProbeOptions attribute) ProbeOptions (class in tike.ptycho.probe) projection() (in module tike.linalg) Propagation (class in tike.operators) propagation_normalization (tike.ptycho.exitwave.ExitWaveOptions attribute) psi (tike.ptycho.solvers.PtychoParameters attribute) Ptycho (class in tike.operators) PtychoParameters (class in tike.ptycho.solvers) put_batch() (in module tike.opt) R raster() (in module tike.scan) read_aps_lynx() (in module tike.ptycho.io) read_aps_velociprobe() (in module tike.ptycho.io) reconstruct() (in module tike.align.align) (in module tike.lamino.lamino) (in module tike.ptycho.ptycho) reconstruct_multigrid() (in module tike.ptycho.ptycho) Reconstruction (class in tike.ptycho.ptycho) recover_probe (tike.ptycho.probe.ProbeOptions attribute) remove_object_ambiguity() (in module tike.ptycho.object) resample() (tike.ptycho.exitwave.ExitWaveOptions method) (tike.ptycho.object.ObjectOptions method) (tike.ptycho.position.AffineTransform method) (tike.ptycho.position.PositionOptions method) (tike.ptycho.probe.ProbeOptions method) (tike.ptycho.solvers.PtychoParameters method) rescale_method (tike.ptycho.solvers.DmOptions attribute) (tike.ptycho.solvers.LstsqOptions attribute) (tike.ptycho.solvers.RpieOptions attribute) rescale_period (tike.ptycho.solvers.DmOptions attribute) (tike.ptycho.solvers.LstsqOptions attribute) (tike.ptycho.solvers.RpieOptions attribute) rescale_probe_using_fixed_intensity_photons() (in module tike.ptycho.probe) resize_complex_image() (in module tike.view) Rotate (class in tike.operators) rpie() (in module tike.ptycho.solvers) RpieOptions (class in tike.ptycho.solvers) S sawtooth() (in module tike.scan) scale0 (tike.ptycho.position.AffineTransform attribute) scale1 (tike.ptycho.position.AffineTransform attribute) scan (tike.ptycho.solvers.PtychoParameters attribute) scan3() (in module tike.scan) scantimes() (in module tike.scan) shear1 (tike.ptycho.position.AffineTransform attribute) Shift (class in tike.operators) simulate() (in module tike.align.align) (in module tike.lamino.lamino) (in module tike.ptycho.ptycho) simulate_varying_weights() (in module tike.ptycho.probe) single_probe() (in module tike.ptycho.fresnel) sinusoid() (in module tike.scan) smoothness_constraint (tike.ptycho.object.ObjectOptions attribute) smoothness_constraint() (in module tike.ptycho.object) spiral() (in module tike.scan) split() (tike.ptycho.position.PositionOptions method) square() (in module tike.scan) staircase() (in module tike.scan) step_length_start (tike.ptycho.exitwave.ExitWaveOptions attribute) step_length_usemodes (tike.ptycho.exitwave.ExitWaveOptions attribute) step_length_weight (tike.ptycho.exitwave.ExitWaveOptions attribute) stripes_equal_count() (in module tike.cluster) sum_square_norm() (in module tike.constants) T t0 (tike.ptycho.position.AffineTransform attribute) t1 (tike.ptycho.position.AffineTransform attribute) tike.align module tike.align.align module tike.align.solvers module tike.cluster module tike.communicators module tike.constants module tike.lamino module tike.lamino.lamino module tike.lamino.solvers module tike.linalg module tike.operators module tike.opt module tike.precision module tike.ptycho module tike.ptycho.exitwave module tike.ptycho.fresnel module tike.ptycho.io module tike.ptycho.learn module tike.ptycho.object module tike.ptycho.position module tike.ptycho.probe module tike.ptycho.ptycho module tike.ptycho.solvers module tike.random module tike.scan module tike.trajectory module tike.view module tilt (tike.operators.Bucket attribute) (tike.operators.Lamino attribute) times (tike.ptycho.solvers.DmOptions attribute) (tike.ptycho.solvers.LstsqOptions attribute) (tike.ptycho.solvers.RpieOptions attribute) trajectory() (in module tike.view) transform (tike.ptycho.position.PositionOptions attribute) triangle() (in module tike.scan) triangle_fs() (in module tike.scan) U unmeasured_pixels_scaling (tike.ptycho.exitwave.ExitWaveOptions attribute) update_eigen_probe() (in module tike.ptycho.probe) update_magnitude_limit (tike.ptycho.position.PositionOptions attribute) update_mnorm (tike.ptycho.object.ObjectOptions attribute) update_period (tike.ptycho.probe.ProbeOptions attribute) update_positions_pd() (in module tike.ptycho.position) update_preconditioners() (in module tike.ptycho.solvers) update_single() (in module tike.opt) update_start (tike.ptycho.position.PositionOptions attribute) (tike.ptycho.probe.ProbeOptions attribute) use_adaptive_moment (tike.ptycho.object.ObjectOptions attribute) (tike.ptycho.position.PositionOptions attribute) (tike.ptycho.probe.ProbeOptions attribute) use_position_regularization (tike.ptycho.position.PositionOptions attribute) V v (tike.ptycho.object.ObjectOptions attribute) (tike.ptycho.position.PositionOptions property) (tike.ptycho.probe.ProbeOptions attribute) vdecay (tike.ptycho.object.ObjectOptions attribute) (tike.ptycho.position.PositionOptions attribute) (tike.ptycho.probe.ProbeOptions attribute) vx (tike.ptycho.position.PositionOptions property) vy (tike.ptycho.position.PositionOptions property) W wavelength() (in module tike.constants) wavenumber() (in module tike.constants) wobbly_center() (in module tike.cluster) wobbly_center_random_bootstrap() (in module tike.cluster)