Index _ | A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | R | S | T | U | V | W _ __init__() (tike.communicators.Comm method) (tike.communicators.MPIComm method) (tike.communicators.ThreadPool method) (tike.ptycho.object.ObjectOptions method) (tike.ptycho.position.AffineTransform method) (tike.ptycho.position.PositionOptions method) (tike.ptycho.probe.ProbeOptions method) (tike.ptycho.ptycho.Reconstruction method) (tike.ptycho.solvers.AdamOptions method) (tike.ptycho.solvers.CgradOptions method) (tike.ptycho.solvers.DmOptions method) (tike.ptycho.solvers.LstsqOptions method) (tike.ptycho.solvers.PtychoParameters method) (tike.ptycho.solvers.RpieOptions method) A adadelta() (in module tike.opt) adagrad() (in module tike.opt) adam() (in module tike.opt) adam_grad() (in module tike.ptycho.solvers) AdamOptions (class in tike.ptycho.solvers) add_modes_cartesian_hermite() (in module tike.ptycho.probe) add_modes_random_phase() (in module tike.ptycho.probe) additional_probe_penalty (tike.ptycho.probe.ProbeOptions attribute) adjust_probe_power() (in module tike.ptycho.probe) affine_position_regularization() (in module tike.ptycho.position) AffineTransform (class in tike.ptycho.position) algorithm_options (tike.ptycho.solvers.PtychoParameters attribute) all_gather() (tike.communicators.ThreadPool method) Allgather() (tike.communicators.MPIComm method) Allreduce() (tike.communicators.Comm method) (tike.communicators.MPIComm method) allreduce() (tike.communicators.ThreadPool method) Allreduce_mean() (tike.communicators.Comm method) Allreduce_reduce_cpu() (tike.communicators.Comm method) Allreduce_reduce_gpu() (tike.communicators.Comm method) alpha (tike.ptycho.solvers.AdamOptions attribute) (tike.ptycho.solvers.RpieOptions attribute) angle (tike.ptycho.position.AffineTransform attribute) append() (tike.ptycho.position.PositionOptions method) append_new_data() (tike.ptycho.ptycho.Reconstruction method) asarray() (tike.ptycho.position.AffineTransform method) asarray3() (tike.ptycho.position.AffineTransform method) astuple() (tike.ptycho.position.AffineTransform method) avgspeed() (in module tike.scan) B batch_indicies() (in module tike.opt) batch_method (tike.ptycho.solvers.AdamOptions attribute) (tike.ptycho.solvers.CgradOptions attribute) (tike.ptycho.solvers.DmOptions attribute) (tike.ptycho.solvers.LstsqOptions attribute) (tike.ptycho.solvers.RpieOptions attribute) Bcast() (tike.communicators.MPIComm method) bcast() (tike.communicators.MPIComm method) (tike.communicators.ThreadPool method) billiard() (in module tike.scan) bucket() (in module tike.lamino.solvers) by_scan_grid() (in module tike.cluster) by_scan_stripes() (in module tike.cluster) C cfloating (in module tike.precision) cg_iter (tike.ptycho.solvers.CgradOptions attribute) cgrad() (in module tike.lamino.solvers) (in module tike.ptycho.solvers) CgradOptions (class in tike.ptycho.solvers) check_allowed_positions() (in module tike.ptycho.position) clip_magnitude (tike.ptycho.object.ObjectOptions attribute) cluster_compact() (in module tike.cluster) (in module tike.random) cluster_wobbly_center() (in module tike.cluster) (in module tike.random) coded_exposure() (in module tike.trajectory) combined_update (tike.ptycho.object.ObjectOptions attribute) Comm (class in tike.communicators) compact() (in module tike.cluster) complex_amplitude() (in module tike.constants) complex_intensity() (in module tike.constants) complex_phase() (in module tike.constants) complexHSV_to_RGB() (in module tike.view) confidence (tike.ptycho.position.PositionOptions attribute) conjugate_gradient() (in module tike.opt) constrain_center_peak() (in module tike.ptycho.probe) constrain_probe_sparsity() (in module tike.ptycho.probe) constrain_variable_probe() (in module tike.ptycho.probe) convergence_window (tike.ptycho.solvers.AdamOptions attribute) (tike.ptycho.solvers.CgradOptions attribute) (tike.ptycho.solvers.DmOptions attribute) (tike.ptycho.solvers.LstsqOptions attribute) (tike.ptycho.solvers.RpieOptions attribute) copy_to_device() (tike.ptycho.object.ObjectOptions method) (tike.ptycho.position.PositionOptions method) (tike.ptycho.probe.ProbeOptions method) copy_to_host() (tike.ptycho.object.ObjectOptions method) (tike.ptycho.position.PositionOptions method) (tike.ptycho.probe.ProbeOptions method) costs (tike.ptycho.solvers.AdamOptions attribute) (tike.ptycho.solvers.CgradOptions attribute) (tike.ptycho.solvers.DmOptions attribute) (tike.ptycho.solvers.LstsqOptions attribute) (tike.ptycho.solvers.RpieOptions attribute) cov() (in module tike.linalg) crop_fourier_space() (in module tike.ptycho.solvers) cross_correlation() (in module tike.align.solvers) cupy_complex() (in module tike.random) D device_count (tike.communicators.ThreadPool attribute) diagonal() (in module tike.scan) dir_single() (in module tike.opt) direction_dy() (in module tike.opt) discrete_trajectory() (in module tike.trajectory) distance() (in module tike.scan) dm() (in module tike.ptycho.solvers) DmOptions (class in tike.ptycho.solvers) E eigen_probe (tike.ptycho.solvers.PtychoParameters attribute) eigen_weights (tike.ptycho.solvers.PtychoParameters attribute) empty() (tike.ptycho.position.PositionOptions method) estimate_global_transformation() (in module tike.ptycho.position) estimate_global_transformation_ransac() (in module tike.ptycho.position) extract_patches() (in module tike.ptycho.learn) F farneback() (in module tike.align.solvers) finite_probe_support() (in module tike.ptycho.probe) fit_line_least_squares() (in module tike.opt) floating (in module tike.precision) force_centered_intensity (tike.ptycho.probe.ProbeOptions attribute) force_orthogonality (tike.ptycho.probe.ProbeOptions attribute) force_sparsity (tike.ptycho.probe.ProbeOptions attribute) fromarray() (tike.ptycho.position.AffineTransform class method) G Gather() (tike.communicators.MPIComm method) gather() (tike.communicators.ThreadPool method) gather_host() (tike.communicators.ThreadPool method) gaussian() (in module tike.ptycho.probe) gaussian_gradient() (in module tike.ptycho.position) get_absorbtion_image() (in module tike.ptycho.object) get_batch() (in module tike.opt) get_convergence() (tike.ptycho.ptycho.Reconstruction method) get_padded_object() (in module tike.ptycho.object) get_probe() (tike.ptycho.ptycho.Reconstruction method) get_psi() (tike.ptycho.ptycho.Reconstruction method) get_varying_probe() (in module tike.ptycho.probe) gpu_count (tike.communicators.Comm attribute) H hermitian() (in module tike.linalg) hexagonal() (in module tike.scan) I init_varying_probe() (in module tike.ptycho.probe) initial_scan (tike.ptycho.position.PositionOptions attribute) inner() (in module tike.linalg) insert() (tike.ptycho.position.PositionOptions method) integer (in module tike.precision) invert() (in module tike.align.align) is_converged() (in module tike.opt) iterate() (tike.ptycho.ptycho.Reconstruction method) J join() (tike.ptycho.position.PositionOptions method) L lengths() (in module tike.scan) line_search() (in module tike.opt) lissajous() (in module tike.scan) lstsq() (in module tike.linalg) lstsq_grad() (in module tike.ptycho.solvers) LstsqOptions (class in tike.ptycho.solvers) M m (tike.ptycho.object.ObjectOptions attribute) (tike.ptycho.position.PositionOptions property) (tike.ptycho.probe.ProbeOptions attribute) map() (tike.communicators.ThreadPool method) mdecay (tike.ptycho.object.ObjectOptions attribute) (tike.ptycho.position.PositionOptions attribute) (tike.ptycho.probe.ProbeOptions attribute) mnorm() (in module tike.linalg) module tike.align tike.align.align tike.align.solvers tike.cluster tike.communicators tike.constants tike.lamino tike.lamino.lamino tike.lamino.solvers tike.linalg tike.operators tike.operators.cupy tike.opt tike.precision tike.ptycho tike.ptycho.fresnel tike.ptycho.io tike.ptycho.learn tike.ptycho.object tike.ptycho.position tike.ptycho.probe tike.ptycho.ptycho tike.ptycho.solvers tike.random tike.scan tike.trajectory tike.view momentum() (in module tike.opt) mpi (tike.communicators.Comm attribute) MPIComm (class in tike.communicators) MPIio_lamino() (tike.communicators.MPIComm method) MPIio_ptycho() (tike.communicators.MPIComm method) MW_probe() (in module tike.ptycho.fresnel) mx (tike.ptycho.position.PositionOptions property) my (tike.ptycho.position.PositionOptions property) N name (tike.ptycho.solvers.AdamOptions attribute) (tike.ptycho.solvers.CgradOptions attribute) (tike.ptycho.solvers.DmOptions attribute) (tike.ptycho.solvers.LstsqOptions attribute) (tike.ptycho.solvers.RpieOptions attribute) norm() (in module tike.linalg) num_batch (tike.ptycho.solvers.AdamOptions attribute) (tike.ptycho.solvers.CgradOptions attribute) (tike.ptycho.solvers.DmOptions attribute) (tike.ptycho.solvers.LstsqOptions attribute) (tike.ptycho.solvers.RpieOptions attribute) num_iter (tike.ptycho.solvers.AdamOptions attribute) (tike.ptycho.solvers.CgradOptions attribute) (tike.ptycho.solvers.DmOptions attribute) (tike.ptycho.solvers.LstsqOptions attribute) (tike.ptycho.solvers.RpieOptions attribute) num_workers (tike.communicators.ThreadPool attribute) (tike.communicators.ThreadPool property) numpy_complex() (in module tike.random) O object_options (tike.ptycho.solvers.PtychoParameters attribute) ObjectOptions (class in tike.ptycho.object) origin (tike.ptycho.position.PositionOptions attribute) orthogonalize_eig() (in module tike.ptycho.probe) orthogonalize_gs() (in module tike.linalg) P pca_eig() (in module tike.linalg) peek() (tike.ptycho.ptycho.Reconstruction method) plot_complex() (in module tike.view) plot_cost_convergence() (in module tike.view) plot_eigen_weights() (in module tike.view) plot_footprint() (in module tike.view) plot_phase() (in module tike.view) plot_position_error() (in module tike.view) plot_positions() (in module tike.view) plot_positions_convergence() (in module tike.view) plot_probe_power() (in module tike.view) plot_probe_power_series() (in module tike.view) plot_sino_coverage() (in module tike.view) plot_trajectories() (in module tike.view) pool (tike.communicators.Comm attribute) position_options (tike.ptycho.solvers.PtychoParameters attribute) position_units_to_pixels() (in module tike.ptycho.io) PositionOptions (class in tike.ptycho.position) positivity_constraint (tike.ptycho.object.ObjectOptions attribute) positivity_constraint() (in module tike.ptycho.object) power (tike.ptycho.probe.ProbeOptions attribute) preconditioner (tike.ptycho.object.ObjectOptions attribute) (tike.ptycho.probe.ProbeOptions attribute) probe (tike.ptycho.solvers.PtychoParameters attribute) probe_options (tike.ptycho.solvers.PtychoParameters attribute) probe_support (tike.ptycho.probe.ProbeOptions attribute) probe_support_degree (tike.ptycho.probe.ProbeOptions attribute) probe_support_radius (tike.ptycho.probe.ProbeOptions attribute) probe_update_sum (tike.ptycho.probe.ProbeOptions attribute) ProbeOptions (class in tike.ptycho.probe) projection() (in module tike.linalg) psi (tike.ptycho.solvers.PtychoParameters attribute) PtychoParameters (class in tike.ptycho.solvers) put_batch() (in module tike.opt) R rank (tike.communicators.MPIComm attribute) raster() (in module tike.scan) read_aps_lynx() (in module tike.ptycho.io) read_aps_velociprobe() (in module tike.ptycho.io) reconstruct() (in module tike.align.align) (in module tike.lamino.lamino) (in module tike.ptycho.ptycho) reconstruct_multigrid() (in module tike.ptycho.ptycho) Reconstruction (class in tike.ptycho.ptycho) reduce() (tike.communicators.Comm method) reduce_cpu() (tike.communicators.ThreadPool method) reduce_gpu() (tike.communicators.ThreadPool method) reduce_mean() (tike.communicators.ThreadPool method) remove_object_ambiguity() (in module tike.ptycho.object) resample() (tike.ptycho.object.ObjectOptions method) (tike.ptycho.position.PositionOptions method) (tike.ptycho.probe.ProbeOptions method) (tike.ptycho.solvers.PtychoParameters method) resize_complex_image() (in module tike.view) rpie() (in module tike.ptycho.solvers) RpieOptions (class in tike.ptycho.solvers) S sawtooth() (in module tike.scan) scale0 (tike.ptycho.position.AffineTransform attribute) scale1 (tike.ptycho.position.AffineTransform attribute) scan (tike.ptycho.solvers.PtychoParameters attribute) scan3() (in module tike.scan) scantimes() (in module tike.scan) scatter() (tike.communicators.ThreadPool method) scatter_bcast() (tike.communicators.ThreadPool method) shear1 (tike.ptycho.position.AffineTransform attribute) shutdown() (tike.communicators.ThreadPool method) simulate() (in module tike.align.align) (in module tike.lamino.lamino) (in module tike.ptycho.ptycho) simulate_varying_weights() (in module tike.ptycho.probe) single_probe() (in module tike.ptycho.fresnel) sinusoid() (in module tike.scan) size (tike.communicators.MPIComm attribute) smoothness_constraint (tike.ptycho.object.ObjectOptions attribute) smoothness_constraint() (in module tike.ptycho.object) spiral() (in module tike.scan) split() (tike.ptycho.position.PositionOptions method) square() (in module tike.scan) staircase() (in module tike.scan) step_length (tike.ptycho.solvers.AdamOptions attribute) (tike.ptycho.solvers.CgradOptions attribute) submit() (tike.communicators.ThreadPool method) sum_square_norm() (in module tike.constants) T t0 (tike.ptycho.position.AffineTransform attribute) t1 (tike.ptycho.position.AffineTransform attribute) ThreadPool (class in tike.communicators) tike.align module tike.align.align module tike.align.solvers module tike.cluster module tike.communicators module tike.constants module tike.lamino module tike.lamino.lamino module tike.lamino.solvers module tike.linalg module tike.operators module tike.operators.cupy module tike.opt module tike.precision module tike.ptycho module tike.ptycho.fresnel module tike.ptycho.io module tike.ptycho.learn module tike.ptycho.object module tike.ptycho.position module tike.ptycho.probe module tike.ptycho.ptycho module tike.ptycho.solvers module tike.random module tike.scan module tike.trajectory module tike.view module times (tike.ptycho.solvers.AdamOptions attribute) (tike.ptycho.solvers.CgradOptions attribute) (tike.ptycho.solvers.DmOptions attribute) (tike.ptycho.solvers.LstsqOptions attribute) (tike.ptycho.solvers.RpieOptions attribute) trajectory() (in module tike.view) transform (tike.ptycho.position.PositionOptions attribute) triangle() (in module tike.scan) triangle_fs() (in module tike.scan) U update_eigen_probe() (in module tike.ptycho.probe) update_positions_pd() (in module tike.ptycho.position) update_preconditioners() (in module tike.ptycho.solvers) update_single() (in module tike.opt) use_adaptive_moment (tike.ptycho.object.ObjectOptions attribute) (tike.ptycho.position.PositionOptions attribute) (tike.ptycho.probe.ProbeOptions attribute) use_position_regularization (tike.ptycho.position.PositionOptions attribute) V v (tike.ptycho.object.ObjectOptions attribute) (tike.ptycho.position.PositionOptions property) (tike.ptycho.probe.ProbeOptions attribute) vdecay (tike.ptycho.object.ObjectOptions attribute) (tike.ptycho.position.PositionOptions attribute) (tike.ptycho.probe.ProbeOptions attribute) vx (tike.ptycho.position.PositionOptions property) vy (tike.ptycho.position.PositionOptions property) W wavelength() (in module tike.constants) wavenumber() (in module tike.constants) wobbly_center() (in module tike.cluster) workers (tike.communicators.ThreadPool attribute)