Tike
v0.23.1
API Reference
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Examples
Contributing
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Tike
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Index
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B
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C
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D
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E
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F
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G
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H
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I
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J
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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X
A
adadelta() (in module tike.opt)
adagrad() (in module tike.opt)
adam() (in module tike.opt)
adam_grad() (in module tike.ptycho.solvers)
AdamOptions (class in tike.ptycho.solvers)
add_modes_cartesian_hermite() (in module tike.ptycho.probe)
add_modes_random_phase() (in module tike.ptycho.probe)
adj() (tike.operators.cupy.Alignment method)
(tike.operators.cupy.Bucket method)
(tike.operators.cupy.Convolution method)
(tike.operators.cupy.Flow method)
(tike.operators.cupy.Lamino method)
(tike.operators.cupy.Operator method)
(tike.operators.cupy.Pad method)
(tike.operators.cupy.Patch method)
(tike.operators.cupy.Propagation method)
(tike.operators.cupy.Ptycho method)
(tike.operators.cupy.Rotate method)
(tike.operators.cupy.Shift method)
adj_all() (tike.operators.cupy.Convolution method)
(tike.operators.cupy.Ptycho method)
adj_probe() (tike.operators.cupy.Convolution method)
(tike.operators.cupy.Ptycho method)
adjust_probe_power() (in module tike.ptycho.probe)
affine_position_regularization() (in module tike.ptycho.position)
algorithm_options (tike.ptycho.solvers.PtychoParameters attribute)
Alignment (class in tike.operators.cupy)
all_gather() (tike.communicators.ThreadPool method)
Allreduce() (tike.communicators.Comm method)
(tike.communicators.MPIComm method)
allreduce() (tike.communicators.ThreadPool method)
Allreduce_mean() (tike.communicators.Comm method)
Allreduce_reduce() (tike.communicators.Comm method)
alpha (tike.ptycho.solvers.AdamOptions attribute)
(tike.ptycho.solvers.RpieOptions attribute)
append() (tike.ptycho.position.PositionOptions method)
append_new_data() (tike.ptycho.ptycho.Reconstruction method)
asarray() (tike.operators.cupy.Alignment class method)
(tike.operators.cupy.Bucket class method)
(tike.operators.cupy.Convolution class method)
(tike.operators.cupy.Flow class method)
(tike.operators.cupy.Lamino class method)
(tike.operators.cupy.Operator class method)
(tike.operators.cupy.Pad class method)
(tike.operators.cupy.Patch class method)
(tike.operators.cupy.Propagation class method)
(tike.operators.cupy.Ptycho class method)
(tike.operators.cupy.Rotate class method)
(tike.operators.cupy.Shift class method)
asnumpy() (tike.operators.cupy.Alignment class method)
(tike.operators.cupy.Bucket class method)
(tike.operators.cupy.Convolution class method)
(tike.operators.cupy.Flow class method)
(tike.operators.cupy.Lamino class method)
(tike.operators.cupy.Operator class method)
(tike.operators.cupy.Pad class method)
(tike.operators.cupy.Patch class method)
(tike.operators.cupy.Propagation class method)
(tike.operators.cupy.Ptycho class method)
(tike.operators.cupy.Rotate class method)
(tike.operators.cupy.Shift class method)
avgspeed() (in module tike.scan)
B
batch_indicies() (in module tike.opt)
batch_method (tike.ptycho.solvers.AdamOptions attribute)
(tike.ptycho.solvers.CgradOptions attribute)
(tike.ptycho.solvers.DmOptions attribute)
(tike.ptycho.solvers.LstsqOptions attribute)
(tike.ptycho.solvers.RpieOptions attribute)
Bcast() (tike.communicators.MPIComm method)
bcast() (tike.communicators.ThreadPool method)
billiard() (in module tike.scan)
Bucket (class in tike.operators.cupy)
bucket() (in module tike.lamino.solvers)
C
centered_intensity_constraint (tike.ptycho.probe.ProbeOptions attribute)
cg_iter (tike.ptycho.solvers.CgradOptions attribute)
cgrad() (in module tike.lamino.solvers)
(in module tike.ptycho.solvers)
CgradOptions (class in tike.ptycho.solvers)
check_allowed_positions() (in module tike.ptycho.position)
clip_magnitude (tike.ptycho.object.ObjectOptions attribute)
cluster_compact() (in module tike.random)
cluster_wobbly_center() (in module tike.random)
combined_update (tike.ptycho.object.ObjectOptions attribute)
Comm (class in tike.communicators)
conjugate_gradient() (in module tike.opt)
constrain_center_peak() (in module tike.ptycho.probe)
constrain_probe_sparsity() (in module tike.ptycho.probe)
constrain_variable_probe() (in module tike.ptycho.probe)
convergence_window (tike.ptycho.solvers.AdamOptions attribute)
(tike.ptycho.solvers.CgradOptions attribute)
(tike.ptycho.solvers.DmOptions attribute)
(tike.ptycho.solvers.LstsqOptions attribute)
(tike.ptycho.solvers.RpieOptions attribute)
Convolution (class in tike.operators.cupy)
copy_to_device() (tike.ptycho.object.ObjectOptions method)
(tike.ptycho.position.PositionOptions method)
(tike.ptycho.probe.ProbeOptions method)
copy_to_host() (tike.ptycho.object.ObjectOptions method)
(tike.ptycho.position.PositionOptions method)
(tike.ptycho.probe.ProbeOptions method)
cost (tike.operators.cupy.Propagation attribute)
cost() (tike.operators.cupy.Bucket method)
(tike.operators.cupy.Lamino method)
(tike.operators.cupy.Ptycho method)
costs (tike.ptycho.solvers.AdamOptions attribute)
(tike.ptycho.solvers.CgradOptions attribute)
(tike.ptycho.solvers.DmOptions attribute)
(tike.ptycho.solvers.LstsqOptions attribute)
(tike.ptycho.solvers.RpieOptions attribute)
cross_correlation() (in module tike.align.solvers)
cupy_complex() (in module tike.random)
D
detector_shape (tike.operators.cupy.Propagation attribute)
device_count (tike.communicators.ThreadPool attribute)
diagonal() (in module tike.scan)
dir_single() (in module tike.opt)
direction_dy() (in module tike.opt)
distance() (in module tike.scan)
dm() (in module tike.ptycho.solvers)
DmOptions (class in tike.ptycho.solvers)
E
eigen_probe (tike.ptycho.solvers.PtychoParameters attribute)
eigen_weights (tike.ptycho.solvers.PtychoParameters attribute)
empty() (tike.ptycho.position.PositionOptions method)
extract_patches() (in module tike.ptycho.learn)
F
farneback() (in module tike.align.solvers)
finite_probe_support() (in module tike.ptycho.probe)
Flow (class in tike.operators.cupy)
fwd() (tike.operators.cupy.Alignment method)
(tike.operators.cupy.Bucket method)
(tike.operators.cupy.Convolution method)
(tike.operators.cupy.Flow method)
(tike.operators.cupy.Lamino method)
(tike.operators.cupy.Operator method)
(tike.operators.cupy.Pad method)
(tike.operators.cupy.Patch method)
(tike.operators.cupy.Propagation method)
(tike.operators.cupy.Ptycho method)
(tike.operators.cupy.Rotate method)
(tike.operators.cupy.Shift method)
G
Gather() (tike.communicators.MPIComm method)
gather() (tike.communicators.ThreadPool method)
gather_host() (tike.communicators.ThreadPool method)
gaussian() (in module tike.ptycho.probe)
get_absorbtion_image() (in module tike.ptycho.object)
get_batch() (in module tike.opt)
get_convergence() (tike.ptycho.ptycho.Reconstruction method)
get_padded_object() (in module tike.ptycho.object)
get_probe() (tike.ptycho.ptycho.Reconstruction method)
get_psi() (tike.ptycho.ptycho.Reconstruction method)
get_varying_probe() (in module tike.ptycho.probe)
gpu_count (tike.communicators.Comm attribute)
grad (tike.operators.cupy.Propagation attribute)
grad() (tike.operators.cupy.Bucket method)
(tike.operators.cupy.Lamino method)
grad_probe() (tike.operators.cupy.Ptycho method)
grad_psi() (tike.operators.cupy.Ptycho method)
H
hexagonal() (in module tike.scan)
I
init_varying_probe() (in module tike.ptycho.probe)
initial_scan (tike.ptycho.position.PositionOptions attribute)
insert() (tike.ptycho.position.PositionOptions method)
inv() (tike.operators.cupy.Alignment method)
(tike.operators.cupy.Flow method)
(tike.operators.cupy.Pad method)
(tike.operators.cupy.Rotate method)
(tike.operators.cupy.Shift method)
invert() (in module tike.align.align)
is_converged() (in module tike.opt)
iterate() (tike.ptycho.ptycho.Reconstruction method)
J
join() (tike.ptycho.position.PositionOptions method)
L
Lamino (class in tike.operators.cupy)
lengths() (in module tike.scan)
line_search() (in module tike.opt)
lissajous() (in module tike.scan)
lstsq_grad() (in module tike.ptycho.solvers)
LstsqOptions (class in tike.ptycho.solvers)
M
m (tike.ptycho.object.ObjectOptions attribute)
(tike.ptycho.probe.ProbeOptions attribute)
map() (tike.communicators.ThreadPool method)
mdecay (tike.ptycho.object.ObjectOptions attribute)
(tike.ptycho.position.PositionOptions attribute)
(tike.ptycho.probe.ProbeOptions attribute)
model (tike.operators.cupy.Propagation attribute)
module
tike.align
tike.align.align
tike.align.solvers
tike.communicators
tike.lamino
tike.lamino.lamino
tike.lamino.solvers
tike.operators
tike.operators.cupy
tike.opt
tike.ptycho
tike.ptycho.fresnel
tike.ptycho.io
tike.ptycho.learn
tike.ptycho.object
tike.ptycho.position
tike.ptycho.probe
tike.ptycho.ptycho
tike.ptycho.solvers
tike.random
tike.scan
tike.view
momentum() (in module tike.opt)
mpi (tike.communicators.Comm attribute)
MPIComm (class in tike.communicators)
MPIio_lamino() (tike.communicators.MPIComm method)
MPIio_ptycho() (tike.communicators.MPIComm method)
MW_probe() (in module tike.ptycho.fresnel)
mx (tike.ptycho.position.PositionOptions property)
my (tike.ptycho.position.PositionOptions property)
N
n (tike.operators.cupy.Bucket attribute)
(tike.operators.cupy.Lamino attribute)
name (tike.ptycho.solvers.AdamOptions attribute)
(tike.ptycho.solvers.CgradOptions attribute)
(tike.ptycho.solvers.DmOptions attribute)
(tike.ptycho.solvers.LstsqOptions attribute)
(tike.ptycho.solvers.RpieOptions attribute)
nscan (tike.operators.cupy.Convolution attribute)
ntheta (tike.operators.cupy.Convolution attribute)
num_batch (tike.ptycho.solvers.AdamOptions attribute)
(tike.ptycho.solvers.CgradOptions attribute)
(tike.ptycho.solvers.DmOptions attribute)
(tike.ptycho.solvers.LstsqOptions attribute)
(tike.ptycho.solvers.RpieOptions attribute)
num_iter (tike.ptycho.solvers.AdamOptions attribute)
(tike.ptycho.solvers.CgradOptions attribute)
(tike.ptycho.solvers.DmOptions attribute)
(tike.ptycho.solvers.LstsqOptions attribute)
(tike.ptycho.solvers.RpieOptions attribute)
num_workers (tike.communicators.ThreadPool attribute)
(tike.communicators.ThreadPool property)
numpy_complex() (in module tike.random)
O
object_options (tike.ptycho.solvers.PtychoParameters attribute)
ObjectOptions (class in tike.ptycho.object)
Operator (class in tike.operators.cupy)
orthogonality_constraint (tike.ptycho.probe.ProbeOptions attribute)
orthogonalize_eig() (in module tike.ptycho.probe)
P
p2p() (tike.communicators.MPIComm method)
Pad (class in tike.operators.cupy)
Patch (class in tike.operators.cupy)
peek() (tike.ptycho.ptycho.Reconstruction method)
plot_complex() (in module tike.view)
plot_cost_convergence() (in module tike.view)
plot_eigen_weights() (in module tike.view)
plot_footprint() (in module tike.view)
plot_phase() (in module tike.view)
plot_position_error() (in module tike.view)
plot_positions() (in module tike.view)
plot_positions_convergence() (in module tike.view)
plot_probe_power() (in module tike.view)
plot_sino_coverage() (in module tike.view)
plot_trajectories() (in module tike.view)
pool (tike.communicators.Comm attribute)
position_options (tike.ptycho.solvers.PtychoParameters attribute)
position_units_to_pixels() (in module tike.ptycho.io)
PositionOptions (class in tike.ptycho.position)
positivity_constraint (tike.ptycho.object.ObjectOptions attribute)
positivity_constraint() (in module tike.ptycho.object)
preconditioner (tike.ptycho.object.ObjectOptions attribute)
probe (tike.ptycho.solvers.PtychoParameters attribute)
probe_options (tike.ptycho.solvers.PtychoParameters attribute)
probe_shape (tike.operators.cupy.Convolution attribute)
probe_support (tike.ptycho.probe.ProbeOptions attribute)
probe_support_degree (tike.ptycho.probe.ProbeOptions attribute)
probe_support_radius (tike.ptycho.probe.ProbeOptions attribute)
ProbeOptions (class in tike.ptycho.probe)
Propagation (class in tike.operators.cupy)
psi (tike.ptycho.solvers.PtychoParameters attribute)
Ptycho (class in tike.operators.cupy)
PtychoParameters (class in tike.ptycho.solvers)
put_batch() (in module tike.opt)
R
rank (tike.communicators.MPIComm attribute)
raster() (in module tike.scan)
read_aps_lynx() (in module tike.ptycho.io)
read_aps_velociprobe() (in module tike.ptycho.io)
reconstruct() (in module tike.align.align)
(in module tike.lamino.lamino)
(in module tike.ptycho.ptycho)
Reconstruction (class in tike.ptycho.ptycho)
reduce() (tike.communicators.Comm method)
reduce_cpu() (tike.communicators.ThreadPool method)
reduce_gpu() (tike.communicators.ThreadPool method)
reduce_mean() (tike.communicators.ThreadPool method)
Rotate (class in tike.operators.cupy)
rpie() (in module tike.ptycho.solvers)
RpieOptions (class in tike.ptycho.solvers)
S
sawtooth() (in module tike.scan)
scan (tike.ptycho.solvers.PtychoParameters attribute)
scan3() (in module tike.scan)
scantimes() (in module tike.scan)
Scatter() (tike.communicators.MPIComm method)
scatter() (tike.communicators.ThreadPool method)
scatter_bcast() (tike.communicators.ThreadPool method)
Shift (class in tike.operators.cupy)
shutdown() (tike.communicators.ThreadPool method)
simulate() (in module tike.align.align)
(in module tike.lamino.lamino)
(in module tike.ptycho.ptycho)
simulate_varying_weights() (in module tike.ptycho.probe)
single_probe() (in module tike.ptycho.fresnel)
sinusoid() (in module tike.scan)
size (tike.communicators.MPIComm attribute)
smoothness_constraint (tike.ptycho.object.ObjectOptions attribute)
smoothness_constraint() (in module tike.ptycho.object)
sparsity_constraint (tike.ptycho.probe.ProbeOptions attribute)
spiral() (in module tike.scan)
split() (tike.ptycho.position.PositionOptions method)
square() (in module tike.scan)
staircase() (in module tike.scan)
step_length (tike.ptycho.solvers.AdamOptions attribute)
(tike.ptycho.solvers.CgradOptions attribute)
submit() (tike.communicators.ThreadPool method)
T
ThreadPool (class in tike.communicators)
tike.align
module
tike.align.align
module
tike.align.solvers
module
tike.communicators
module
tike.lamino
module
tike.lamino.lamino
module
tike.lamino.solvers
module
tike.operators
module
tike.operators.cupy
module
tike.opt
module
tike.ptycho
module
tike.ptycho.fresnel
module
tike.ptycho.io
module
tike.ptycho.learn
module
tike.ptycho.object
module
tike.ptycho.position
module
tike.ptycho.probe
module
tike.ptycho.ptycho
module
tike.ptycho.solvers
module
tike.random
module
tike.scan
module
tike.view
module
tilt (tike.operators.cupy.Bucket attribute)
(tike.operators.cupy.Lamino attribute)
times (tike.ptycho.solvers.AdamOptions attribute)
(tike.ptycho.solvers.CgradOptions attribute)
(tike.ptycho.solvers.DmOptions attribute)
(tike.ptycho.solvers.LstsqOptions attribute)
(tike.ptycho.solvers.RpieOptions attribute)
trajectory() (in module tike.view)
triangle() (in module tike.scan)
triangle_fs() (in module tike.scan)
U
update_eigen_probe() (in module tike.ptycho.probe)
update_positions_pd() (in module tike.ptycho.position)
update_single() (in module tike.opt)
use_adaptive_moment (tike.ptycho.object.ObjectOptions attribute)
(tike.ptycho.position.PositionOptions attribute)
(tike.ptycho.probe.ProbeOptions attribute)
use_position_regularization (tike.ptycho.position.PositionOptions attribute)
V
v (tike.ptycho.object.ObjectOptions attribute)
(tike.ptycho.probe.ProbeOptions attribute)
vdecay (tike.ptycho.object.ObjectOptions attribute)
(tike.ptycho.position.PositionOptions attribute)
(tike.ptycho.probe.ProbeOptions attribute)
vx (tike.ptycho.position.PositionOptions property)
vy (tike.ptycho.position.PositionOptions property)
W
workers (tike.communicators.ThreadPool attribute)
X
xp (tike.operators.cupy.Operator attribute)
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