Tike
v0.24.2
API Reference
Installation Instructions
Examples
Contributing
License
Tike
Docs
»
Index
Edit on GitHub
Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
A
adadelta() (in module tike.opt)
adagrad() (in module tike.opt)
adam() (in module tike.opt)
adam_grad() (in module tike.ptycho.solvers)
AdamOptions (class in tike.ptycho.solvers)
add_modes_cartesian_hermite() (in module tike.ptycho.probe)
add_modes_random_phase() (in module tike.ptycho.probe)
additional_probe_penalty (tike.ptycho.probe.ProbeOptions attribute)
adj() (tike.operators.cupy.Alignment method)
(tike.operators.cupy.Bucket method)
(tike.operators.cupy.Convolution method)
(tike.operators.cupy.Flow method)
(tike.operators.cupy.Lamino method)
(tike.operators.cupy.Operator method)
(tike.operators.cupy.Pad method)
(tike.operators.cupy.Patch method)
(tike.operators.cupy.Propagation method)
(tike.operators.cupy.Ptycho method)
(tike.operators.cupy.Rotate method)
(tike.operators.cupy.Shift method)
adj_all() (tike.operators.cupy.Convolution method)
(tike.operators.cupy.Ptycho method)
adj_probe() (tike.operators.cupy.Convolution method)
(tike.operators.cupy.Ptycho method)
adjust_probe_power() (in module tike.ptycho.probe)
affine_position_regularization() (in module tike.ptycho.position)
AffineTransform (class in tike.ptycho.position)
algorithm_options (tike.ptycho.solvers.PtychoParameters attribute)
Alignment (class in tike.operators.cupy)
all_gather() (tike.communicators.ThreadPool method)
Allgather() (tike.communicators.MPIComm method)
Allreduce() (tike.communicators.Comm method)
(tike.communicators.MPIComm method)
allreduce() (tike.communicators.ThreadPool method)
Allreduce_mean() (tike.communicators.Comm method)
Allreduce_reduce_cpu() (tike.communicators.Comm method)
Allreduce_reduce_gpu() (tike.communicators.Comm method)
alpha (tike.ptycho.solvers.AdamOptions attribute)
(tike.ptycho.solvers.RpieOptions attribute)
angle (tike.ptycho.position.AffineTransform attribute)
append() (tike.ptycho.position.PositionOptions method)
append_new_data() (tike.ptycho.ptycho.Reconstruction method)
asarray() (tike.operators.cupy.Alignment class method)
(tike.operators.cupy.Bucket class method)
(tike.operators.cupy.Convolution class method)
(tike.operators.cupy.Flow class method)
(tike.operators.cupy.Lamino class method)
(tike.operators.cupy.Operator class method)
(tike.operators.cupy.Pad class method)
(tike.operators.cupy.Patch class method)
(tike.operators.cupy.Propagation class method)
(tike.operators.cupy.Ptycho class method)
(tike.operators.cupy.Rotate class method)
(tike.operators.cupy.Shift class method)
(tike.ptycho.position.AffineTransform method)
asarray3() (tike.ptycho.position.AffineTransform method)
asnumpy() (tike.operators.cupy.Alignment class method)
(tike.operators.cupy.Bucket class method)
(tike.operators.cupy.Convolution class method)
(tike.operators.cupy.Flow class method)
(tike.operators.cupy.Lamino class method)
(tike.operators.cupy.Operator class method)
(tike.operators.cupy.Pad class method)
(tike.operators.cupy.Patch class method)
(tike.operators.cupy.Propagation class method)
(tike.operators.cupy.Ptycho class method)
(tike.operators.cupy.Rotate class method)
(tike.operators.cupy.Shift class method)
astuple() (tike.ptycho.position.AffineTransform method)
avgspeed() (in module tike.scan)
B
batch_indicies() (in module tike.opt)
batch_method (tike.ptycho.solvers.AdamOptions attribute)
(tike.ptycho.solvers.CgradOptions attribute)
(tike.ptycho.solvers.DmOptions attribute)
(tike.ptycho.solvers.LstsqOptions attribute)
(tike.ptycho.solvers.RpieOptions attribute)
Bcast() (tike.communicators.MPIComm method)
bcast() (tike.communicators.MPIComm method)
(tike.communicators.ThreadPool method)
billiard() (in module tike.scan)
Bucket (class in tike.operators.cupy)
bucket() (in module tike.lamino.solvers)
C
cg_iter (tike.ptycho.solvers.CgradOptions attribute)
cgrad() (in module tike.lamino.solvers)
(in module tike.ptycho.solvers)
CgradOptions (class in tike.ptycho.solvers)
check_allowed_positions() (in module tike.ptycho.position)
clip_magnitude (tike.ptycho.object.ObjectOptions attribute)
cluster_compact() (in module tike.random)
cluster_wobbly_center() (in module tike.random)
combined_update (tike.ptycho.object.ObjectOptions attribute)
Comm (class in tike.communicators)
complexHSV_to_RGB() (in module tike.view)
confidence (tike.ptycho.position.PositionOptions attribute)
conjugate_gradient() (in module tike.opt)
constrain_center_peak() (in module tike.ptycho.probe)
constrain_probe_sparsity() (in module tike.ptycho.probe)
constrain_variable_probe() (in module tike.ptycho.probe)
convergence_window (tike.ptycho.solvers.AdamOptions attribute)
(tike.ptycho.solvers.CgradOptions attribute)
(tike.ptycho.solvers.DmOptions attribute)
(tike.ptycho.solvers.LstsqOptions attribute)
(tike.ptycho.solvers.RpieOptions attribute)
Convolution (class in tike.operators.cupy)
copy_to_device() (tike.ptycho.object.ObjectOptions method)
(tike.ptycho.position.PositionOptions method)
(tike.ptycho.probe.ProbeOptions method)
copy_to_host() (tike.ptycho.object.ObjectOptions method)
(tike.ptycho.position.PositionOptions method)
(tike.ptycho.probe.ProbeOptions method)
cost (tike.operators.cupy.Propagation attribute)
cost() (tike.operators.cupy.Bucket method)
(tike.operators.cupy.Lamino method)
(tike.operators.cupy.Ptycho method)
crop_fourier_space() (in module tike.ptycho.solvers)
cross_correlation() (in module tike.align.solvers)
cupy_complex() (in module tike.random)
D
detector_shape (tike.operators.cupy.Propagation attribute)
Device (tike.communicators.ThreadPool attribute)
device_count (tike.communicators.ThreadPool attribute)
diagonal() (in module tike.scan)
dir_single() (in module tike.opt)
direction_dy() (in module tike.opt)
distance() (in module tike.scan)
dm() (in module tike.ptycho.solvers)
DmOptions (class in tike.ptycho.solvers)
E
eigen_probe (tike.ptycho.solvers.PtychoParameters attribute)
eigen_weights (tike.ptycho.solvers.PtychoParameters attribute)
empty() (tike.ptycho.position.PositionOptions method)
estimate_global_transformation() (in module tike.ptycho.position)
estimate_global_transformation_ransac() (in module tike.ptycho.position)
extract_patches() (in module tike.ptycho.learn)
F
farneback() (in module tike.align.solvers)
finite_probe_support() (in module tike.ptycho.probe)
fit_line_least_squares() (in module tike.opt)
Flow (class in tike.operators.cupy)
force_centered_intensity (tike.ptycho.probe.ProbeOptions attribute)
force_orthogonality (tike.ptycho.probe.ProbeOptions attribute)
force_sparsity (tike.ptycho.probe.ProbeOptions attribute)
fromarray() (tike.ptycho.position.AffineTransform class method)
fwd() (tike.operators.cupy.Alignment method)
(tike.operators.cupy.Bucket method)
(tike.operators.cupy.Convolution method)
(tike.operators.cupy.Flow method)
(tike.operators.cupy.Lamino method)
(tike.operators.cupy.Operator method)
(tike.operators.cupy.Pad method)
(tike.operators.cupy.Patch method)
(tike.operators.cupy.Propagation method)
(tike.operators.cupy.Ptycho method)
(tike.operators.cupy.Rotate method)
(tike.operators.cupy.Shift method)
G
Gather() (tike.communicators.MPIComm method)
gather() (tike.communicators.ThreadPool method)
gather_host() (tike.communicators.ThreadPool method)
gaussian() (in module tike.ptycho.probe)
gaussian_gradient() (in module tike.ptycho.position)
get_absorbtion_image() (in module tike.ptycho.object)
get_batch() (in module tike.opt)
get_convergence() (tike.ptycho.ptycho.Reconstruction method)
get_padded_object() (in module tike.ptycho.object)
get_probe() (tike.ptycho.ptycho.Reconstruction method)
get_psi() (tike.ptycho.ptycho.Reconstruction method)
get_varying_probe() (in module tike.ptycho.probe)
gpu_count (tike.communicators.Comm attribute)
grad (tike.operators.cupy.Propagation attribute)
grad() (tike.operators.cupy.Bucket method)
(tike.operators.cupy.Lamino method)
grad_probe() (tike.operators.cupy.Ptycho method)
grad_psi() (tike.operators.cupy.Ptycho method)
H
hexagonal() (in module tike.scan)
I
init_varying_probe() (in module tike.ptycho.probe)
initial_scan (tike.ptycho.position.PositionOptions attribute)
insert() (tike.ptycho.position.PositionOptions method)
inv() (tike.operators.cupy.Alignment method)
(tike.operators.cupy.Flow method)
(tike.operators.cupy.Pad method)
(tike.operators.cupy.Rotate method)
(tike.operators.cupy.Shift method)
invert() (in module tike.align.align)
is_converged() (in module tike.opt)
iterate() (tike.ptycho.ptycho.Reconstruction method)
J
join() (tike.ptycho.position.PositionOptions method)
L
Lamino (class in tike.operators.cupy)
lengths() (in module tike.scan)
line_search() (in module tike.opt)
lissajous() (in module tike.scan)
lstsq_grad() (in module tike.ptycho.solvers)
LstsqOptions (class in tike.ptycho.solvers)
M
m (tike.ptycho.object.ObjectOptions attribute)
(tike.ptycho.position.PositionOptions attribute)
(tike.ptycho.probe.ProbeOptions attribute)
map() (tike.communicators.ThreadPool method)
mdecay (tike.ptycho.object.ObjectOptions attribute)
(tike.ptycho.position.PositionOptions attribute)
(tike.ptycho.probe.ProbeOptions attribute)
model (tike.operators.cupy.Propagation attribute)
momentum() (in module tike.opt)
mpi (tike.communicators.Comm attribute)
MPIComm (class in tike.communicators)
MPIio_lamino() (tike.communicators.MPIComm method)
MPIio_ptycho() (tike.communicators.MPIComm method)
MW_probe() (in module tike.ptycho.fresnel)
mx (tike.ptycho.position.PositionOptions attribute)
my (tike.ptycho.position.PositionOptions attribute)
N
n (tike.operators.cupy.Bucket attribute)
(tike.operators.cupy.Lamino attribute)
name (tike.ptycho.solvers.AdamOptions attribute)
(tike.ptycho.solvers.CgradOptions attribute)
(tike.ptycho.solvers.DmOptions attribute)
(tike.ptycho.solvers.LstsqOptions attribute)
(tike.ptycho.solvers.RpieOptions attribute)
nscan (tike.operators.cupy.Convolution attribute)
ntheta (tike.operators.cupy.Convolution attribute)
num_batch (tike.ptycho.solvers.AdamOptions attribute)
(tike.ptycho.solvers.CgradOptions attribute)
(tike.ptycho.solvers.DmOptions attribute)
(tike.ptycho.solvers.LstsqOptions attribute)
(tike.ptycho.solvers.RpieOptions attribute)
num_iter (tike.ptycho.solvers.AdamOptions attribute)
(tike.ptycho.solvers.CgradOptions attribute)
(tike.ptycho.solvers.DmOptions attribute)
(tike.ptycho.solvers.LstsqOptions attribute)
(tike.ptycho.solvers.RpieOptions attribute)
num_workers (tike.communicators.ThreadPool attribute)
,
[1]
numpy_complex() (in module tike.random)
O
object_options (tike.ptycho.solvers.PtychoParameters attribute)
ObjectOptions (class in tike.ptycho.object)
Operator (class in tike.operators.cupy)
origin (tike.ptycho.position.PositionOptions attribute)
orthogonalize_eig() (in module tike.ptycho.probe)
P
Pad (class in tike.operators.cupy)
Patch (class in tike.operators.cupy)
peek() (tike.ptycho.ptycho.Reconstruction method)
plot_complex() (in module tike.view)
plot_cost_convergence() (in module tike.view)
plot_eigen_weights() (in module tike.view)
plot_footprint() (in module tike.view)
plot_phase() (in module tike.view)
plot_position_error() (in module tike.view)
plot_positions() (in module tike.view)
plot_positions_convergence() (in module tike.view)
plot_probe_power() (in module tike.view)
plot_probe_power_series() (in module tike.view)
plot_sino_coverage() (in module tike.view)
plot_trajectories() (in module tike.view)
pool (tike.communicators.Comm attribute)
position_options (tike.ptycho.solvers.PtychoParameters attribute)
position_units_to_pixels() (in module tike.ptycho.io)
PositionOptions (class in tike.ptycho.position)
positivity_constraint (tike.ptycho.object.ObjectOptions attribute)
positivity_constraint() (in module tike.ptycho.object)
power (tike.ptycho.probe.ProbeOptions attribute)
preconditioner (tike.ptycho.object.ObjectOptions attribute)
probe (tike.ptycho.solvers.PtychoParameters attribute)
probe_options (tike.ptycho.solvers.PtychoParameters attribute)
probe_shape (tike.operators.cupy.Convolution attribute)
probe_support (tike.ptycho.probe.ProbeOptions attribute)
probe_support_degree (tike.ptycho.probe.ProbeOptions attribute)
probe_support_radius (tike.ptycho.probe.ProbeOptions attribute)
probe_update_sum (tike.ptycho.probe.ProbeOptions attribute)
ProbeOptions (class in tike.ptycho.probe)
Propagation (class in tike.operators.cupy)
psi (tike.ptycho.solvers.PtychoParameters attribute)
Ptycho (class in tike.operators.cupy)
PtychoParameters (class in tike.ptycho.solvers)
put_batch() (in module tike.opt)
R
rank (tike.communicators.MPIComm attribute)
raster() (in module tike.scan)
read_aps_lynx() (in module tike.ptycho.io)
read_aps_velociprobe() (in module tike.ptycho.io)
reconstruct() (in module tike.align.align)
(in module tike.lamino.lamino)
(in module tike.ptycho.ptycho)
reconstruct_multigrid() (in module tike.ptycho.ptycho)
Reconstruction (class in tike.ptycho.ptycho)
reduce() (tike.communicators.Comm method)
reduce_cpu() (tike.communicators.ThreadPool method)
reduce_gpu() (tike.communicators.ThreadPool method)
reduce_mean() (tike.communicators.ThreadPool method)
remove_object_ambiguity() (in module tike.ptycho.object)
resample() (tike.ptycho.object.ObjectOptions method)
(tike.ptycho.position.PositionOptions method)
(tike.ptycho.probe.ProbeOptions method)
(tike.ptycho.solvers.PtychoParameters method)
resize_complex_image() (in module tike.view)
Rotate (class in tike.operators.cupy)
rpie() (in module tike.ptycho.solvers)
RpieOptions (class in tike.ptycho.solvers)
S
sawtooth() (in module tike.scan)
scale0 (tike.ptycho.position.AffineTransform attribute)
scale1 (tike.ptycho.position.AffineTransform attribute)
scan (tike.ptycho.solvers.PtychoParameters attribute)
scan3() (in module tike.scan)
scantimes() (in module tike.scan)
scatter() (tike.communicators.ThreadPool method)
scatter_bcast() (tike.communicators.ThreadPool method)
shear1 (tike.ptycho.position.AffineTransform attribute)
Shift (class in tike.operators.cupy)
shutdown() (tike.communicators.ThreadPool method)
simulate() (in module tike.align.align)
(in module tike.lamino.lamino)
(in module tike.ptycho.ptycho)
simulate_varying_weights() (in module tike.ptycho.probe)
single_probe() (in module tike.ptycho.fresnel)
sinusoid() (in module tike.scan)
size (tike.communicators.MPIComm attribute)
smoothness_constraint (tike.ptycho.object.ObjectOptions attribute)
smoothness_constraint() (in module tike.ptycho.object)
spiral() (in module tike.scan)
split() (tike.ptycho.position.PositionOptions method)
square() (in module tike.scan)
staircase() (in module tike.scan)
step_length (tike.ptycho.solvers.AdamOptions attribute)
(tike.ptycho.solvers.CgradOptions attribute)
submit() (tike.communicators.ThreadPool method)
T
t0 (tike.ptycho.position.AffineTransform attribute)
t1 (tike.ptycho.position.AffineTransform attribute)
ThreadPool (class in tike.communicators)
tike.align (module)
tike.align.align (module)
tike.align.solvers (module)
tike.communicators (module)
tike.lamino (module)
tike.lamino.lamino (module)
tike.lamino.solvers (module)
tike.operators (module)
tike.operators.cupy (module)
tike.opt (module)
tike.ptycho (module)
tike.ptycho.fresnel (module)
tike.ptycho.io (module)
tike.ptycho.learn (module)
tike.ptycho.object (module)
tike.ptycho.position (module)
tike.ptycho.probe (module)
tike.ptycho.ptycho (module)
tike.ptycho.solvers (module)
tike.random (module)
tike.scan (module)
tike.view (module)
tilt (tike.operators.cupy.Bucket attribute)
(tike.operators.cupy.Lamino attribute)
trajectory() (in module tike.view)
transform (tike.ptycho.position.PositionOptions attribute)
triangle() (in module tike.scan)
triangle_fs() (in module tike.scan)
U
update_eigen_probe() (in module tike.ptycho.probe)
update_positions_pd() (in module tike.ptycho.position)
update_single() (in module tike.opt)
use_adaptive_moment (tike.ptycho.object.ObjectOptions attribute)
(tike.ptycho.position.PositionOptions attribute)
(tike.ptycho.probe.ProbeOptions attribute)
use_position_regularization (tike.ptycho.position.PositionOptions attribute)
V
v (tike.ptycho.object.ObjectOptions attribute)
(tike.ptycho.position.PositionOptions attribute)
(tike.ptycho.probe.ProbeOptions attribute)
vdecay (tike.ptycho.object.ObjectOptions attribute)
(tike.ptycho.position.PositionOptions attribute)
(tike.ptycho.probe.ProbeOptions attribute)
vx (tike.ptycho.position.PositionOptions attribute)
vy (tike.ptycho.position.PositionOptions attribute)
W
workers (tike.communicators.ThreadPool attribute)
Read the Docs
v: v0.24.2
Versions
latest
stable
v0.24.2
v0.24.1
v0.23.5
v0.23.4
v0.23.3
v0.23.2
v0.23.1
v0.23.0
v0.22.2
v0.22.1
v0.22.0
v0.21.1
v0.21.0
v0.20.1
v0.20.0
v0.19.0
v0.18.0
v0.17.0
rtd
Downloads
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.